If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ), 'gf_id' => 'HOM05D000906', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000906' ), 'data_identifier' => 'HOM05D000906', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000906', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '660', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12590' => 'bna', 'A02p24770' => 'bna', 'A02p40740' => 'bna', 'A04p10740' => 'bna', 'A05p31480' => 'bna', 'A09p20900' => 'bna', 'A09p28250' => 'bna', 'A10p08050' => 'bna', 'Aa31LG11G3450' => 'aar', 'Aa31LG11G3460' => 'aar', 'Aa31LG1G7930' => 'aar', 'Aa31LG9G110' => 'aar', 'Aa31LG9G11180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1484' => 'aag', 'Actinidia00866' => 'ach', 'Actinidia03642' => 'ach', 'Actinidia08643' => 'ach', 'Actinidia08644' => 'ach', 'Actinidia08645' => 'ach', 'Actinidia26766' => 'ach', 'Ah.01g001920' => 'amhyb', 'Ah.01g013670' => 'amhyb', 'Ah.07g205690' => 'amhyb', 'Ah.12g052610' => 'amhyb', 'Ah.13g070260' => 'amhyb', 'Ah.14g084000' => 'amhyb', 'Ah.14g084060' => 'amhyb', 'AL3G42810' => 'aly', 'AL5G30710' => 'aly', 'AL6G35580' => 'aly', 'AL6G35590' => 'aly', 'AL6G35600' => 'aly', 'AL6G35620' => 'aly', 'AL6G35630' => 'aly', 'AL6G35640' => 'aly', 'AL6G35650' => 'aly', 'AL6G45050' => 'aly', 'AL8G25080' => 'aly', 'Aqoxy1G01738' => 'aox', 'Aqoxy7G00088' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1IA0LX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80H951' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI0Z11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FY4DMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1AIB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UGC1SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3Z7BF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMM8S7' => 'arhy', 'AT2G05260' => 'ath', 'AT4G10955' => 'ath', 'AT5G24180' => 'ath', 'AT5G24190' => 'ath', 'AT5G24200' => 'ath', 'AT5G24210' => 'ath', 'AT5G24220' => 'ath', 'AT5G24230' => 'ath', 'AT5G50890' => 'ath', 'ATR0585G053' => 'atr', 'ATR0602G114' => 'atr', 'Atru.chr6.2059' => 'acertr', 'AUR62006097' => 'cqu', 'AUR62006098' => 'cqu', 'AUR62010851' => 'cqu', 'AUR62015138' => 'cqu', 'AUR62017598' => 'cqu', 'AUR62019395' => 'cqu', 'AUR62019850' => 'cqu', 'AUR62041308' => 'cqu', 'BcaB01g01566' => 'bca', 'BcaB02g09131' => 'bca', 'BcaB05g23406' => 'bca', 'BcaB05g24025' => 'bca', 'BcaB06g27103' => 'bca', 'BcaB07g29899' => 'bca', 'BcaB08g35457' => 'bca', 'BcaC02g09588' => 'bca', 'BcaC02g09833' => 'bca', 'BcaC03g14632' => 'bca', 'BcaC03g16134' => 'bca', 'BcaC03g18001' => 'bca', 'BcaC04g20785' => 'bca', 'BcaC04g21090' => 'bca', 'BcaC04g23528' => 'bca', 'BcaC04g23530' => 'bca', 'BcaC04g23531' => 'bca', 'BcaC04g23532' => 'bca', 'BcaC09g49989' => 'bca', 'BcaNung01804' => 'bca', 'BcaNung01805' => 'bca', 'BolC2t08207H' => 'bol', 'BolC2t08235H' => 'bol', 'BolC2t12109H' => 'bol', 'BolC4t26016H' => 'bol', 'BolC7t44879H' => 'bol', 'BolC9t53645H' => 'bol', 'BolC9t53646H' => 'bol', 'BolC9t56415H' => 'bol', 'BolC9t56802H' => 'bol', 'BraA02t06317Z' => 'bra', 'BraA02t07465Z' => 'bra', 'BraA02t09021Z' => 'bra', 'BraA04t16738Z' => 'bra', 'BraA09t36303Z' => 'bra', 'BraA09t38394Z' => 'bra', 'BraSC35t45994Z' => 'bra', 'C01p30350' => 'bna', 'C02p20650' => 'bna', 'C02p20930' => 'bna', 'C02p60580' => 'bna', 'C04p36050' => 'bna', 'C04p44460' => 'bna', 'C07p43520' => 'bna', 'C09p07330' => 'bna', 'C09p35810' => 'bna', 'C09p39240' => 'bna', 'CAN.G1335.3' => 'can', 'CAN.G1804.13' => 'can', 'CAN.G2018.4' => 'can', 'CAN.G585.24' => 'can', 'CAN.G640.29' => 'can', 'CAN.G650.15' => 'can', 'CAN.G968.7' => 'can', 'CAN.G968.8' => 'can', 'CANSAT21G0989' => 'cansat', 'CANSAT21G1627' => 'cansat', 'CANSAT64G0233' => 'cansat', 'CARHR103070' => 'chi', 'CARHR189310' => 'chi', 'CARHR189320' => 'chi', 'CARHR189330' => 'chi', 'CARHR255650' => 'chi', 'CARHR257370' => 'chi', 'Carub.0003s2672' => 'cru', 'Carub.0006s2193' => 'cru', 'Carub.0006s2194' => 'cru', 'Carub.0006s2195' => 'cru', 'Carub.0006s2196' => 'cru', 'Carub.0006s2197' => 'cru', 'Carub.0006s2198' => 'cru', 'Carub.0006s2199' => 'cru', 'Carub.0006s2970' => 'cru', 'Carub.0006s3635' => 'cru', 'Carub.0008s1089' => 'cru', 'Ca_06269_v3' => 'car', 'Ca_06270_v3' => 'car', 'Ca_14604_v3' => 'car', 'Ca_17477_v3' => 'car', 'Ca_24498_v3' => 'car', 'Cc02_g01630' => 'ccan', 'Cc05_g09690' => 'ccan', 'Cc08_g16170' => 'ccan', 'CDE06G1083' => 'cde', 'CDE10G0528' => 'cde', 'CDE10G0529' => 'cde', 'Cfa011990' => 'cfa', 'Cfa016222' => 'cfa', 'Cfa016223' => 'cfa', 'Cfa016224' => 'cfa', 'Cfa023069' => 'cfa', 'Ciclev10020881m.g' => 'ccl', 'Ciclev10020959m.g' => 'ccl', 'Ciclev10031770m.g' => 'ccl', 'CiPaw.04G138800' => 'cil', 'CiPaw.05G250900' => 'cil', 'CiPaw.05G251000' => 'cil', 'CiPaw.05G251100' => 'cil', 'CiPaw.11G119900' => 'cil', 'CiPaw.11G120000' => 'cil', 'ClCG01G001720' => 'cla', 'ClCG11G016460' => 'cla', 'COL.COLO4_08897' => 'col', 'COL.COLO4_11276' => 'col', 'COL.COLO4_11277' => 'col', 'COL.COLO4_15384' => 'col', 'Cpa.g.sc50.103' => 'cpa', 'Cpa.g.sc79.19' => 'cpa', 'CsaV3_4G031910' => 'csa', 'CsaV3_5G001860' => 'csa', 'CSS0012151' => 'camsi', 'CSS0018465' => 'camsi', 'CSS0022459' => 'camsi', 'CSS0032041' => 'camsi', 'CSS0037167' => 'camsi', 'CSS0038077' => 'camsi', 'CSS0039118' => 'camsi', 'CSS0046468' => 'camsi', 'CSS0049582' => 'camsi', 'DCAR_001962' => 'dca', 'DCAR_013321' => 'dca', 'DCAR_023048' => 'dca', 'Dinv08609' => 'din', 'Dinv29287' => 'din', 'Dinv35329' => 'din', 'Dinv37522' => 'din', 'Duzib068G0856' => 'dzi', 'Duzib068G1046' => 'dzi', 'Duzib130G0004' => 'dzi', 'Duzib133G1458' => 'dzi', 'Duzib138G1492' => 'dzi', 'Duzib177G0891' => 'dzi', 'Duzib177G0980' => 'dzi', 'Duzib205G0550' => 'dzi', 'Duzib211G0155' => 'dzi', 'ECA232G0807' => 'eca', 'ECA232G3720' => 'eca', 'ECA233G3122' => 'eca', 'ECA233G4442' => 'eca', 'ECA246G1265' => 'eca', 'EL10Ac3g05291' => 'bvu', 'EL10Ac5g12925' => 'bvu', 'EL10Ac7g18139' => 'bvu', 'EL10Ac7g18140' => 'bvu', 'EL10Ac7g18142' => 'bvu', 'EL10Ac7g18143' => 'bvu', 'EL10Ac7g18144' => 'bvu', 'EL10Ac7g18145' => 'bvu', 'EL10Ac7g18146' => 'bvu', 'EL10Ac7g18147' => 'bvu', 'EL10Ac9g22846' => 'bvu', 'Eucgr.A01458' => 'egr', 'Eucgr.A02014' => 'egr', 'Eucgr.E00874' => 'egr', 'Eucgr.E00876' => 'egr', 'Eucgr.E00877' => 'egr', 'Eucgr.E00878' => 'egr', 'Eucgr.E00879' => 'egr', 'Eucgr.K01222' => 'egr', 'FAN02G1731' => 'fan', 'FAN09G0892' => 'fan', 'FAN14G4058' => 'fan', 'FAN15G2150' => 'fan', 'FAN18G0378' => 'fan', 'FAN18G3858' => 'fan', 'FAN18G4285' => 'fan', 'FAN20G1126' => 'fan', 'FAN24G2338' => 'fan', 'FAN27G1183' => 'fan', 'FvH4_2g24630' => 'fve', 'FvH4_5g04751' => 'fve', 'FvH4_5g04760' => 'fve', 'FvH4_6g37920' => 'fve', 'FvH4_6g38560' => 'fve', 'Glyma.01G226000' => 'gma', 'Glyma.02G285200' => 'gma', 'Glyma.02G286400' => 'gma', 'Glyma.05G217400' => 'gma', 'Glyma.06G128400' => 'gma', 'Glyma.07G158400' => 'gma', 'Glyma.08G023400' => 'gma', 'Glyma.08G308300' => 'gma', 'Glyma.14G029600' => 'gma', 'Glyma.18G108700' => 'gma', 'Gohir.A05G414400' => 'ghi', 'Gohir.A05G414500' => 'ghi', 'Gohir.A07G080800' => 'ghi', 'Gohir.A08G112600' => 'ghi', 'Gohir.A08G216300' => 'ghi', 'Gohir.A08G216566' => 'ghi', 'Gohir.A12G237100' => 'ghi', 'Gohir.A12G250200' => 'ghi', 'Gohir.D04G001600' => 'ghi', 'Gohir.D04G001700' => 'ghi', 'Gohir.D07G086400' => 'ghi', 'Gohir.D08G125600' => 'ghi', 'Gohir.D08G232700' => 'ghi', 'Gohir.D08G233300' => 'ghi', 'Gohir.D08G233733' => 'ghi', 'Gohir.D12G238101' => 'ghi', 'Gohir.D12G238300' => 'ghi', 'Gohir.D12G251000' => 'ghi', 'Gorai.001G092400' => 'gra', 'Gorai.004G132500' => 'gra', 'Gorai.004G247200' => 'gra', 'Gorai.004G247800' => 'gra', 'Gorai.004G248300' => 'gra', 'Gorai.008G255200' => 'gra', 'Gorai.008G269100' => 'gra', 'Gorai.012G002700' => 'gra', 'Gorai.012G002800' => 'gra', 'GSVIVG01019548001' => 'vvi', 'GSVIVG01020848001' => 'vvi', 'GSVIVG01038695001' => 'vvi', 'GSVIVG01038696001' => 'vvi', 'GSVIVG01038697001' => 'vvi', 'HanXRQChr08g0229311' => 'han', 'HanXRQChr09g0252851' => 'han', 'HanXRQChr10g0316981' => 'han', 'HanXRQChr14g0437541' => 'han', 'HanXRQChr15g0484671' => 'han', 'HanXRQChr15g0493561' => 'han', 'HanXRQChr15g0493571' => 'han', 'HanXRQChr15g0496391' => 'han', 'HanXRQChr17g0534911' => 'han', 'Haze_00219' => 'cav', 'Haze_00220' => 'cav', 'Haze_13525' => 'cav', 'Hma1.2p1_0099F.1_g048690' => 'hma', 'Hma1.2p1_0440F.1_g153390' => 'hma', 'Hma1.2p1_1188F.1_g265280' => 'hma', 'Hma1.2p1_1188F.1_g265300' => 'hma', 'Hma1.2p1_1188F.1_g265310' => 'hma', 'HPP92_023267' => 'vpl', 'HPP92_023298' => 'vpl', 'HPP92_024172' => 'vpl', 'HPP92_027156' => 'vpl', 'HPP92_027382' => 'vpl', 'Hund11383' => 'sun', 'Hund11666' => 'sun', 'Hund14214' => 'sun', 'Hund15264' => 'sun', 'Lalb_Chr04g0248861' => 'lal', 'Lalb_Chr05g0211501' => 'lal', 'Lalb_Chr05g0224081' => 'lal', 'Lalb_Chr09g0332381' => 'lal', 'Lalb_Chr15g0081261' => 'lal', 'Lalb_Chr16g0376921' => 'lal', 'Lj1A601G22' => 'lonja', 'Lj3P905T5' => 'lonja', 'Lj4g0027871' => 'lja', 'Lj6g0025194' => 'lja', 'LjContig00049g0013473' => 'lja', 'LjContig00049g0017958' => 'lja', 'LjContig00312_ERROPOS870357g0026565' => 'lja', 'Lsat_1_v5_gn_2_18740' => 'lsa', 'Lsat_1_v5_gn_2_18760' => 'lsa', 'Lsat_1_v5_gn_2_18820' => 'lsa', 'Lsat_1_v5_gn_3_11060' => 'lsa', 'Lsat_1_v5_gn_6_11800' => 'lsa', 'Lsat_1_v5_gn_6_12600' => 'lsa', 'Lsat_1_v5_gn_8_128601' => 'lsa', 'Manes.01G049800' => 'mes', 'Manes.01G130400' => 'mes', 'Manes.01G182501' => 'mes', 'Manes.02G009100' => 'mes', 'Manes.02G088200' => 'mes', 'Mapoly0004s0210' => 'mpo', 'Mapoly0004s0211' => 'mpo', 'Mapoly0004s0212' => 'mpo', 'Mapoly0010s0216' => 'mpo', 'Mapoly0010s0218' => 'mpo', 'Mapoly0014s0175' => 'mpo', 'Mapoly0022s0064' => 'mpo', 'Mapoly0046s0047' => 'mpo', 'Mapoly0059s0049' => 'mpo', 'Mapoly0085s0016' => 'mpo', 'Mapoly0106s0001' => 'mpo', 'Mapoly0128s0002' => 'mpo', 'Mapoly0128s0003' => 'mpo', 'Mapoly0137s0023' => 'mpo', 'Mapoly0166s0023' => 'mpo', 'Mapoly0166s0024' => 'mpo', 'Mapoly0166s0025' => 'mpo', 'Mapoly0194s0013' => 'mpo', 'Mapoly0255s0002' => 'mpo', 'Mapoly0497s0001' => 'mpo', 'Mapoly0631s0001' => 'mpo', 'Mapoly1893s0001' => 'mpo', 'Mapoly2122s0001' => 'mpo', 'MBI06_g08482_MAGBIO' => 'mbi', 'MBI07_g15284_MAGBIO' => 'mbi', 'MBI07_g26371_MAGBIO' => 'mbi', 'MD06G1108800' => 'mdo', 'MD09G1149800' => 'mdo', 'MD14G1129700' => 'mdo', 'MD17G1136700' => 'mdo', 'Medtr3g046880' => 'mtr', 'Medtr5g009140' => 'mtr', 'Medtr5g028370' => 'mtr', 'Medtr5g091200' => 'mtr', 'Medtr5g091230' => 'mtr', 'Medtr5g091240' => 'mtr', 'Medtr8g099555' => 'mtr', 'MELO3C005767.2' => 'cme', 'MELO3C026967.2' => 'cme', 'Migut.B01137' => 'egut', 'Migut.E01255' => 'egut', 'Migut.E01771' => 'egut', 'Migut.F00221' => 'egut', 'Migut.F01033' => 'egut', 'Migut.M00559' => 'egut', 'Migut.M00560' => 'egut', 'MSTRG.11916' => 'ama', 'MSTRG.15034' => 'ama', 'MSTRG.1803' => 'ama', 'MSTRG.6740' => 'ama', 'Nitab4.5_0001210g0120' => 'nta', 'Nitab4.5_0001520g0080' => 'nta', 'Nitab4.5_0001655g0040' => 'nta', 'Nitab4.5_0002209g0050' => 'nta', 'Nitab4.5_0003104g0090' => 'nta', 'Nitab4.5_0004162g0030' => 'nta', 'Nitab4.5_0004243g0040' => 'nta', 'Nitab4.5_0005219g0020' => 'nta', 'Nitab4.5_0006775g0070' => 'nta', 'Nitab4.5_0008627g0010' => 'nta', 'Nitab4.5_0009678g0050' => 'nta', 'Nitab4.5_0014599g0010' => 'nta', 'Nn3g18994' => 'nnu', 'Nn3g19267' => 'nnu', 'Nn3g20696' => 'nnu', 'Nn3g21794' => 'nnu', 'Nn4g23277' => 'nnu', 'Nn4g26540' => 'nnu', 'Nn6g35142' => 'nnu', 'Nn7g36841' => 'nnu', 'Nn8g39027' => 'nnu', 'Oeu009967.1' => 'oeu', 'Oeu020050.1' => 'oeu', 'Oeu022750.1' => 'oeu', 'Oeu025370.1' => 'oeu', 'Oeu030288.1' => 'oeu', 'Oeu033981.1' => 'oeu', 'Oeu037081.1' => 'oeu', 'Os01g0243000' => 'osa', 'Os01g0666400' => 'osa', 'Os01g0719900' => 'osa', 'Os01g0751600' => 'osa', 'Os02g0286200' => 'osa', 'Os07g0466000' => 'osa', 'Os07g0527900' => 'osa', 'Os07g0528200' => 'osa', 'Os07g0528400' => 'osa', 'Os07g0586800' => 'osa', 'Peaxi162Scf00035g00243' => 'pax', 'Peaxi162Scf00074g00735' => 'pax', 'Peaxi162Scf00111g00230' => 'pax', 'Peaxi162Scf00550g00531' => 'pax', 'PGR042G3312' => 'pgr', 'PGR142G0440' => 'pgr', 'PGR142G4129' => 'pgr', 'PGR142G4353' => 'pgr', 'PGSC0003DMG400008303' => 'stu', 'PGSC0003DMG400009080' => 'stu', 'PGSC0003DMG400012273' => 'stu', 'PGSC0003DMG400017351' => 'stu', 'PGSC0003DMG400021286' => 'stu', 'Phvul.002G043900' => 'pvu', 'Phvul.002G164900' => 'pvu', 'Phvul.002G298800' => 'pvu', 'Phvul.006G031450' => 'pvu', 'Phvul.008G193500' => 'pvu', 'Phvul.008G193600' => 'pvu', 'Potri.001G090500' => 'ptr', 'Potri.002G058100' => 'ptr', 'Potri.003G141100' => 'ptr', 'Potri.005G204100' => 'ptr', 'Pp3c11_24150' => 'ppa', 'Pp3c11_6460' => 'ppa', 'Pp3c12_3330' => 'ppa', 'Pp3c12_3400' => 'ppa', 'Pp3c22_7080' => 'ppa', 'Pp3c26_3430' => 'ppa', 'Pp3c2_21840' => 'ppa', 'Pp3c5_3499' => 'ppa', 'Pp3c8_2260' => 'ppa', 'Pp3c8_25480' => 'ppa', 'Pp3s272_10' => 'ppa', 'Prupe.3G176300' => 'ppe', 'Prupe.5G121400' => 'ppe', 'Prupe.5G121600' => 'ppe', 'Prupe.8G030400' => 'ppe', 'Psat0s1569g0080' => 'psa', 'Psat2g016840' => 'psa', 'Psat2g185880' => 'psa', 'Psat5g194320' => 'psa', 'Psat5g240040' => 'psa', 'Psat5g240120' => 'psa', 'Psat7g025000' => 'psa', 'PSO017G2218' => 'pso', 'PSO017G5580' => 'pso', 'PSO063G0348' => 'pso', 'PSO104G0018' => 'pso', 'PSO104G0242' => 'pso', 'PSO104G0270' => 'pso', 'PSO135G0031' => 'pso', 'PSO135G0364' => 'pso', 'PSO135G0424' => 'pso', 'PSO135G0639' => 'pso', 'PSO135G0650' => 'pso', 'PSO135G1051' => 'pso', 'PSO170G5849' => 'pso', 'PSO384G1964' => 'pso', 'PSO384G1976' => 'pso', 'PSO384G2569' => 'pso', 'PSO384G3151' => 'pso', 'PSO384G3467' => 'pso', 'PSO384G4424' => 'pso', 'PSO384G4733' => 'pso', 'PSO421G0446' => 'pso', 'PSO675G4886' => 'pso', 'PSO732G0462' => 'pso', 'PSO732G0716' => 'pso', 'QL02p030180' => 'qlo', 'QL02p092550' => 'qlo', 'QL02p092560' => 'qlo', 'QL03p024823' => 'qlo', 'QL08p044855' => 'qlo', 'QL09p009198' => 'qlo', 'QL09p009208' => 'qlo', 'QL09p009215' => 'qlo', 'QL09p009222' => 'qlo', 'QL09p009244' => 'qlo', 'QL09p009250' => 'qlo', 'QL09p009397' => 'qlo', 'RcHm_v2.0_Chr2g0151971' => 'rch', 'RcHm_v2.0_Chr6g0292461' => 'rch', 'RcHm_v2.0_Chr7g0194501' => 'rch', 'RcHm_v2.0_Chr7g0194511' => 'rch', 'Rhsim02G0121000' => 'rsi', 'Rhsim02G0121100' => 'rsi', 'Rhsim02G0121600' => 'rsi', 'Rhsim02G0121700' => 'rsi', 'Rhsim02G0121800' => 'rsi', 'Rhsim02G0183900' => 'rsi', 'Rhsim02G0184300' => 'rsi', 'Rhsim03G0208300' => 'rsi', 'Rhsim07G0081800' => 'rsi', 'Rhsim12G0008100' => 'rsi', 'RhsimUnG0233400' => 'rsi', 'Sabra01G0066700' => 'sbr', 'Sabra02G0047400' => 'sbr', 'Sabra03G0101600' => 'sbr', 'Sabra05G0154800' => 'sbr', 'SalBow2G0698' => 'sbo', 'SalBow4G2150' => 'sbo', 'SalBow6G3094' => 'sbo', 'SalBow7G0675' => 'sbo', 'SalBow7G1301' => 'sbo', 'SalBow8G0730' => 'sbo', 'SalBow8G2291' => 'sbo', 'Sc01g0010340' => 'sci', 'Sc15g0002390' => 'sci', 'Sc25g0000890' => 'sci', 'Sed0012948' => 'sed', 'Sed0020209' => 'sed', 'SEGI_01231' => 'sgi', 'SEGI_02984' => 'sgi', 'SEGI_03355' => 'sgi', 'SEGI_03579' => 'sgi', 'SEGI_05192' => 'sgi', 'SEGI_05951' => 'sgi', 'SEGI_11004' => 'sgi', 'SEGI_14174' => 'sgi', 'SEGI_14432' => 'sgi', 'SEGI_22262' => 'sgi', 'SEGI_22653' => 'sgi', 'SEGI_23288' => 'sgi', 'SEGI_27127' => 'sgi', 'SEGI_30212' => 'sgi', 'SEGI_35965' => 'sgi', 'SEGI_37213' => 'sgi', 'SEGI_38711' => 'sgi', 'SEGI_39746' => 'sgi', 'SGA_v2.0_scaffold10G05242' => 'sas', 'SGA_v2.0_scaffold111G31407' => 'sas', 'SGA_v2.0_scaffold389G50549' => 'sas', 'SGA_v2.0_scaffold431G51568' => 'sas', 'SGA_v2.0_scaffold44G16797' => 'sas', 'SGA_v2.0_scaffold4G02122' => 'sas', 'SGA_v2.0_scaffold697G53476' => 'sas', 'SGA_v2.0_scaffold70G23617' => 'sas', 'SGA_v2.0_scaffold70G23630' => 'sas', 'SGA_v2.0_scaffold83G26287' => 'sas', 'SHI06964' => 'shi', 'SHI10530' => 'shi', 'SMO172G0016' => 'smo', 'SMO172G0075' => 'smo', 'SMO172G0080' => 'smo', 'SMO172G0092' => 'smo', 'SMO172G0101' => 'smo', 'SMO172G0109' => 'smo', 'SMO172G0130' => 'smo', 'SMO172G0206' => 'smo', 'Solyc02g070610.3' => 'sly', 'Solyc03g083370.3' => 'sly', 'Solyc07g056250.3' => 'sly', 'Solyc08g082450.3' => 'sly', 'Solyc10g007710.3' => 'sly', 'Sopen02g019690' => 'spe', 'Sopen03g023120' => 'spe', 'Sopen07g029610' => 'spe', 'Sopen08g030700' => 'spe', 'Sopen10g003620' => 'spe', 'Sp2g23130' => 'spa', 'Sp6g06530' => 'spa', 'Sp6g13020' => 'spa', 'Sp7g01360' => 'spa', 'Sp7g04520' => 'spa', 'TAR375G0072' => 'tar', 'TAR626G1229' => 'tar', 'TAR626G1247' => 'tar', 'TAR627G0091' => 'tar', 'TAR629G1308' => 'tar', 'TAR636G0151' => 'tar', 'TAR636G0993' => 'tar', 'TAR636G1316' => 'tar', 'TAR636G1562' => 'tar', 'TAR636G2621' => 'tar', 'TAR636G2971' => 'tar', 'TAR636G3694' => 'tar', 'THA.LOC104798896' => 'tha', 'THA.LOC104809327' => 'tha', 'THA.LOC104813043' => 'tha', 'THA.LOC104815839' => 'tha', 'THA.LOC104826237' => 'tha', 'Thecc.01G170300' => 'tca', 'Thecc.03G197800' => 'tca', 'Thecc.03G197900' => 'tca', 'Thecc.03G299300' => 'tca', 'Thecc.03G299500' => 'tca', 'Thecc.05G279800' => 'tca', 'Thhalv10004425m.g' => 'esa', 'Thhalv10005574m.g' => 'esa', 'Thhalv10013533m.g' => 'esa', 'Thhalv10017864m.g' => 'esa', 'Thhalv10027806m.g' => 'esa', 'Thhalv10028954m.g' => 'esa', 'TPR.G10967' => 'tpr', 'TPR.G12658' => 'tpr', 'TPR.G12692' => 'tpr', 'TPR.G13536' => 'tpr', 'TPR.G15431' => 'tpr', 'TPR.G15432' => 'tpr', 'TPR.G16781' => 'tpr', 'TPR.G17994' => 'tpr', 'TPR.G17995' => 'tpr', 'TPR.G20520' => 'tpr', 'TPR.G22589' => 'tpr', 'TPR.G22939' => 'tpr', 'TPR.G25582' => 'tpr', 'TPR.G25609' => 'tpr', 'TPR.G30962' => 'tpr', 'TPR.G3417' => 'tpr', 'TPR.G38010' => 'tpr', 'TPR.G388' => 'tpr', 'TPR.G39488' => 'tpr', 'TWI23G0749' => 'twi', 'TWI39G0218' => 'twi', 'TWI39G0521' => 'twi', 'TWI59G0051' => 'twi', 'TWI60G0162' => 'twi', 'unitig_60.g25597' => 'ugi', 'unitig_747.g21600' => 'ugi', 'vmacro00999' => 'vma', 'vmacro06536' => 'vma', 'vmacro13892' => 'vma', 'VMungo0251G1591' => 'vmu', 'VMungo0540G2218' => 'vmu', 'VMungo0647G0428' => 'vmu', 'VMungo0647G1642' => 'vmu', 'VMungo0720G0556' => 'vmu', 'VMungo1215G2633' => 'vmu', 'Zm00001eb108070' => 'zma', 'Zm00001eb122350' => 'zma', 'Zm00001eb153450' => 'zma', 'Zm00001eb154610' => 'zma', 'Zm00001eb203780' => 'zma', 'Zm00001eb326000' => 'zma', 'Zm00001eb359750' => 'zma', 'Zm00001eb370890' => 'zma' ) $gf_id = 'HOM05D000906' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000906' ) $data_identifier = 'HOM05D000906' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 11, 'aox' => (int) 2, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 1, 'cqu' => (int) 8, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 2, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 4, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 11, 'egr' => (int) 8, 'fan' => (int) 10, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 23, 'mbi' => (int) 3, 'mdo' => (int) 4, 'mtr' => (int) 7, 'cme' => (int) 2, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 24, 'qlo' => (int) 12, 'rch' => (int) 4, 'rsi' => (int) 11, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 18, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 19, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb370890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1